Welcome to scATAcat’s documentation!

scATAcat is a python library designed for annotation of cell-types in single-cell ATAC-seq data based on characterized bulk ATAC-seq data.

scATAcat relies on and integrated with scanpy and annnotated data python libraries.

The source code is available at scATAcat GitHub repository.

Contents:

• scATAcat package
• Installation
• Tutorial
• Citation
• Contact

Indices and tables

• Index

• Module Index

• Search Page